Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000595.1 Corchorus olitorius cultivar O-4 contig00595, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 708

Length: 1180
ACGTcount: A:0.32, C:0.18, G:0.16, T:0.34


Found at i:617 original size:19 final size:20

Alignment explanation


    Indices: 569--629  Score: 88
    Period size: 21  Copynumber: 3.0  Consensus size: 20

        559 ATCGCTGCTC

                                
        569 TAATAATCTCATCTGTACAG
          1 TAATAATCTCATCTGTACAG

                      *          
        589 TACATAATCTAATCTGTACAG
          1 TA-ATAATCTCATCTGTACAG

              *                 
        610 T-GTAATCTCATCTGTACAG
          1 TAATAATCTCATCTGTACAG

             
        629 T
          1 T

        630 TGCCAAATAG


Statistics
Matches: 37,  Mismatches: 3, Indels: 3
        0.86            0.07        0.07

Matches are distributed among these distances:
  19   17  0.46
  20    2  0.05
  21   18  0.49

ACGTcount: A:0.33, C:0.20, G:0.11, T:0.36


Consensus pattern (20 bp):   
TAATAATCTCATCTGTACAG
Done.