Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01005951.1 Corchorus olitorius cultivar O-4 contig05976, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 656

Length: 1094
ACGTcount: A:0.37, C:0.09, G:0.14, T:0.41


Found at i:677 original size:28 final size:28

Alignment explanation


    Indices: 637--693  Score: 114
    Period size: 28  Copynumber: 2.0  Consensus size: 28

        627 TTAATCTCTC

                                        
        637 TTTCGTTTTATTTTACAATGGGGGGAGG
          1 TTTCGTTTTATTTTACAATGGGGGGAGG

                                        
        665 TTTCGTTTTATTTTACAATGGGGGGAGG
          1 TTTCGTTTTATTTTACAATGGGGGGAGG

             
        693 T
          1 T

        694 GCATGCCCTT


Statistics
Matches: 29,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  28   29  1.00

ACGTcount: A:0.18, C:0.07, G:0.32, T:0.44


Consensus pattern (28 bp):   
TTTCGTTTTATTTTACAATGGGGGGAGG
Done.