Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01005957.1 Corchorus olitorius cultivar O-4 contig05982, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 658

Length: 1097
ACGTcount: A:0.25, C:0.16, G:0.20, T:0.38


Found at i:958 original size:154 final size:152

Alignment explanation


    Indices: 678--1097  Score: 678
    Period size: 154  Copynumber: 2.7  Consensus size: 152

        668 GATTTGTATC

                               *             *                               
        678 ACTAACTATAATCATTTTGATGAGATTAGTCCATTGTGAAGTTTTTAGCTCATTTGGAACACTTG
          1 ACTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTG

                   *     *                   *                               
        743 TTATTTTAGGCCTTTCGGGGCCCATTAGTTCCGATTTGAATCGTCTTCGATTTGGCAAACCTCAA
         66 TTA-TTTGGGCCTATCGGGGCCCATTAGTT-CGTTTTGAATCGTCTTCGATTTGGCAAACCTCAA

            *                       
        808 TGCTTTTCATTCCATTGTTTATGG
        129 AGCTTTTCATTCCATTGTTTATGG

                                                   *          *              
        832 ACTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGATGTTTTTAGCTAATTTGGAACACTTG
          1 ACTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTG

                                  *                                          
        897 TTATTTGGGGCCTATCGGGGCCGATTAGTTCTGTTTTGAATCGTCTTCGATTTGGCAAACCTCAA
         66 TTATTT-GGGCCTATCGGGGCCCATTAGTTC-GTTTTGAATCGTCTTCGATTTGGCAAACCTCAA

                    *               
        962 AGCTTTTCTTTCCATTGTTTATGG
        129 AGCTTTTCATTCCATTGTTTATGG

                            *                             *                  
        986 ACTAACTATAATCATTCTGGTGAGATTAGTCCACTGTGAAGTTTTTTGCTCATTTGGAACACTTG
          1 ACTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTG

                                                           
       1051 TTATTATGGGCCTATCGGGGCCCATTAGTTACGTTTTGAATCGTCTT
         66 TTATT-TGGGCCTATCGGGGCCCATTAGTT-CGTTTTGAATCGTCTT


Statistics
Matches: 247,  Mismatches: 15, Indels: 8
        0.91            0.06        0.03

Matches are distributed among these distances:
 153    4  0.02
 154  241  0.98
 155    2  0.01

ACGTcount: A:0.22, C:0.18, G:0.20, T:0.40


Consensus pattern (152 bp):   
ACTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTG
TTATTTGGGCCTATCGGGGCCCATTAGTTCGTTTTGAATCGTCTTCGATTTGGCAAACCTCAAAG
CTTTTCATTCCATTGTTTATGG
Done.