Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01005965.1 Corchorus olitorius cultivar O-4 contig05990, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 891

Length: 1485
ACGTcount: A:0.33, C:0.18, G:0.19, T:0.30


Found at i:591 original size:13 final size:13

Alignment explanation


    Indices: 573--598  Score: 52
    Period size: 13  Copynumber: 2.0  Consensus size: 13

        563 CTTGGCATGA

                         
        573 GTGATGATTTTTG
          1 GTGATGATTTTTG

                         
        586 GTGATGATTTTTG
          1 GTGATGATTTTTG

        599 TTGAGATCTT


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   13  1.00

ACGTcount: A:0.15, C:0.00, G:0.31, T:0.54


Consensus pattern (13 bp):   
GTGATGATTTTTG
Done.