Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01005972.1 Corchorus olitorius cultivar O-4 contig05997, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 802

Length: 1337
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32


Found at i:156 original size:15 final size:16

Alignment explanation


    Indices: 128--161  Score: 52
    Period size: 15  Copynumber: 2.2  Consensus size: 16

        118 TACAAGTAAA

                          * 
        128 GATATATCGATATGTG
          1 GATATATCGATATGAG

                            
        144 GATATAT-GATATGAG
          1 GATATATCGATATGAG

               
        159 GAT
          1 GAT

        162 TTATAGTTGA


Statistics
Matches: 17,  Mismatches: 1, Indels: 1
        0.89            0.05        0.05

Matches are distributed among these distances:
  15   10  0.59
  16    7  0.41

ACGTcount: A:0.35, C:0.03, G:0.26, T:0.35


Consensus pattern (16 bp):   
GATATATCGATATGAG
Done.