Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000598.1 Corchorus olitorius cultivar O-4 contig00598, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 759

Length: 1265
ACGTcount: A:0.35, C:0.15, G:0.17, T:0.33


Found at i:1007 original size:158 final size:160

Alignment explanation


    Indices: 700--1010  Score: 533
    Period size: 158  Copynumber: 2.0  Consensus size: 160

        690 ATGATCTTCA

                                                                             
        700 ATTTCATTTTTGGCCTTCTTTTTCTTCCAATTTAATGAAGAAAAATTTATGAAACCTATCAAGAC
          1 ATTTCATTTTTGGCCTTCTTTTTCTTCCAATTTAATGAAGAAAAATTTATGAAACCTATCAAGAC

                                                                             
        765 AAAATAAATTCAAGTTAGAAGTTAGAAATTAAAAATAAGAAAATTAAAAACTTAAAATGGAAGAT
         66 AAAATAAATTCAAGTTAGAAGTTAGAAATTAAAAATAAGAAAATTAAAAACTTAAAATGGAAGAT

               *                          
        830 AAATAGGAAATTAAAATTATTGGCCTTCTT
        131 AAAAAGGAAATTAAAATTATTGGCCTTCTT

                       *                                                     
        860 ATTTCATTTTTTG-CTTC-TTTTCTTCCAATTT-ATGGAAGAAAAATTCT-TGAAACCTATCAAG
          1 ATTTCATTTTTGGCCTTCTTTTTCTTCCAATTTAAT-GAAGAAAAATT-TATGAAACCTATCAAG

                                                        *                    
        921 ACAAAATAAATTCAAGTTAGAA-TCTAGAAATTAAAAATAAGAATATTAAAAACTTAAAATGGAA
         64 ACAAAATAAATTCAAGTTAGAAGT-TAGAAATTAAAAATAAGAAAATTAAAAACTTAAAATGGAA

                                      
        985 GATAAAAAGGAAATTAAAATTATTGG
        128 GATAAAAAGGAAATTAAAATTATTGG

       1011 GTTTTCTCCC


Statistics
Matches: 145,  Mismatches: 3, Indels: 8
        0.93            0.02        0.05

Matches are distributed among these distances:
 157    3  0.02
 158  125  0.86
 159    5  0.03
 160   12  0.08

ACGTcount: A:0.46, C:0.10, G:0.11, T:0.33


Consensus pattern (160 bp):   
ATTTCATTTTTGGCCTTCTTTTTCTTCCAATTTAATGAAGAAAAATTTATGAAACCTATCAAGAC
AAAATAAATTCAAGTTAGAAGTTAGAAATTAAAAATAAGAAAATTAAAAACTTAAAATGGAAGAT
AAAAAGGAAATTAAAATTATTGGCCTTCTT
Done.