Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01005981.1 Corchorus olitorius cultivar O-4 contig06006, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 855

Length: 1426
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.34


Found at i:1325 original size:19 final size:21

Alignment explanation


    Indices: 1301--1339  Score: 55
    Period size: 19  Copynumber: 2.0  Consensus size: 21

       1291 TACTCCTCAT

                                 
       1301 TAAATTGA-TAAA-ATGTTAC
          1 TAAATTGATTAAAGATGTTAC

                  *             
       1320 TAAATTTATTAAAGATGTTA
          1 TAAATTGATTAAAGATGTTA

       1340 GGTTACTAAA


Statistics
Matches: 17,  Mismatches: 1, Indels: 2
        0.85            0.05        0.10

Matches are distributed among these distances:
  19    7  0.41
  20    4  0.24
  21    6  0.35

ACGTcount: A:0.46, C:0.03, G:0.10, T:0.41


Consensus pattern (21 bp):   
TAAATTGATTAAAGATGTTAC

Found at i:1401 original size:22 final size:21

Alignment explanation


    Indices: 1361--1403  Score: 59
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       1351 TACCTTATAC

                          *      
       1361 TATAAAATTTTTTATAACCTT
          1 TATAAAATTTTTTACAACCTT

                 *                
       1382 TATAACATTTTTTAACAACCTT
          1 TATAAAATTTTTT-ACAACCTT

       1404 AAAGAAAAAC


Statistics
Matches: 19,  Mismatches: 2, Indels: 1
        0.86            0.09        0.05

Matches are distributed among these distances:
  21   12  0.63
  22    7  0.37

ACGTcount: A:0.37, C:0.14, G:0.00, T:0.49


Consensus pattern (21 bp):   
TATAAAATTTTTTACAACCTT
Done.