Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01005985.1 Corchorus olitorius cultivar O-4 contig06010, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 946

Length: 1578
ACGTcount: A:0.31, C:0.21, G:0.15, T:0.33


Found at i:683 original size:12 final size:11

Alignment explanation


    Indices: 662--688  Score: 54
    Period size: 11  Copynumber: 2.5  Consensus size: 11

        652 ATTCCTTTCC

                       
        662 TTTTTGTTTTT
          1 TTTTTGTTTTT

                       
        673 TTTTTGTTTTT
          1 TTTTTGTTTTT

                 
        684 TTTTT
          1 TTTTT

        689 CTAGCTTGGG


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  11   16  1.00

ACGTcount: A:0.00, C:0.00, G:0.07, T:0.93


Consensus pattern (11 bp):   
TTTTTGTTTTT

Found at i:770 original size:33 final size:33

Alignment explanation


    Indices: 733--801  Score: 93
    Period size: 33  Copynumber: 2.1  Consensus size: 33

        723 GCGCTGGCAA

                                 *   *       
        733 GGCCCACGCGCCTGGCCTAGGTGCTGGGCCACT
          1 GGCCCACGCGCCTGGCCTAGGCGCTAGGCCACT

                 **        *                 
        766 GGCCCGTGCGCCTGGTCTAGGCGCTAGGCCACT
          1 GGCCCACGCGCCTGGCCTAGGCGCTAGGCCACT

               
        799 GGC
          1 GGC

        802 TCAACAACCT


Statistics
Matches: 31,  Mismatches: 5, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  33   31  1.00

ACGTcount: A:0.09, C:0.38, G:0.38, T:0.16


Consensus pattern (33 bp):   
GGCCCACGCGCCTGGCCTAGGCGCTAGGCCACT
Done.