Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01005993.1 Corchorus olitorius cultivar O-4 contig06018, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1670
ACGTcount: A:0.33, C:0.19, G:0.19, T:0.29


Found at i:1631 original size:15 final size:15

Alignment explanation


    Indices: 1611--1662  Score: 50
    Period size: 15  Copynumber: 3.3  Consensus size: 15

       1601 TCAGTTAGTC

                           
       1611 AGAGAGGGTGAGGTG
          1 AGAGAGGGTGAGGTG

                     *  *    
       1626 AGAGAGGGAGGTTGGTG
          1 AGAGAGGG-TG-AGGTG

             *    *        
       1643 ACAGAGAGTGAGGTG
          1 AGAGAGGGTGAGGTG

                 
       1658 AGAGA
          1 AGAGA

       1663 TCATCTAA


Statistics
Matches: 28,  Mismatches: 7, Indels: 4
        0.72            0.18        0.10

Matches are distributed among these distances:
  15   16  0.57
  16    2  0.07
  17   10  0.36

ACGTcount: A:0.31, C:0.02, G:0.54, T:0.13


Consensus pattern (15 bp):   
AGAGAGGGTGAGGTG
Done.