Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006009.1 Corchorus olitorius cultivar O-4 contig06034, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 642

Length: 1070
ACGTcount: A:0.33, C:0.13, G:0.16, T:0.38


Found at i:423 original size:18 final size:19

Alignment explanation


    Indices: 400--436  Score: 58
    Period size: 18  Copynumber: 2.0  Consensus size: 19

        390 GCCAATCCAA

                               
        400 TTTTTCACTATA-TATTAT
          1 TTTTTCACTATATTATTAT

                   *           
        418 TTTTTCAGTATATTATTAT
          1 TTTTTCACTATATTATTAT

        437 ATTCCTAACT


Statistics
Matches: 17,  Mismatches: 1, Indels: 1
        0.89            0.05        0.05

Matches are distributed among these distances:
  18   11  0.65
  19    6  0.35

ACGTcount: A:0.27, C:0.08, G:0.03, T:0.62


Consensus pattern (19 bp):   
TTTTTCACTATATTATTAT

Found at i:737 original size:2 final size:2

Alignment explanation


    Indices: 703--729  Score: 54
    Period size: 2  Copynumber: 13.5  Consensus size: 2

        693 GTAAAACTAG

                                                    
        703 TA TA TA TA TA TA TA TA TA TA TA TA TA T
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA T

        730 GCATATATGC


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   25  1.00

ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52


Consensus pattern (2 bp):   
TA
Done.