Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006014.1 Corchorus olitorius cultivar O-4 contig06039, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1859
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.34


Found at i:714 original size:26 final size:23

Alignment explanation


    Indices: 668--714  Score: 67
    Period size: 26  Copynumber: 1.9  Consensus size: 23

        658 TCCTTCTATT

                                   
        668 CATCTATCATCAAGTTTTTCATC
          1 CATCTATCATCAAGTTTTTCATC

                                    
        691 CATCTCATCCATCAAAGTTTTTCA
          1 CATCT-AT-CATC-AAGTTTTTCA

        715 AATTTTCAAG


Statistics
Matches: 21,  Mismatches: 0, Indels: 3
        0.88            0.00        0.12

Matches are distributed among these distances:
  23    5  0.24
  24    2  0.10
  25    4  0.19
  26   10  0.48

ACGTcount: A:0.28, C:0.28, G:0.04, T:0.40


Consensus pattern (23 bp):   
CATCTATCATCAAGTTTTTCATC
Done.