Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006016.1 Corchorus olitorius cultivar O-4 contig06041, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 816

Length: 1361
ACGTcount: A:0.36, C:0.13, G:0.18, T:0.33


Found at i:1270 original size:25 final size:25

Alignment explanation


    Indices: 1236--1284  Score: 89
    Period size: 25  Copynumber: 2.0  Consensus size: 25

       1226 TTAATAATCC

                                     
       1236 ATGAGTTTTGATGTTATTTTACTTA
          1 ATGAGTTTTGATGTTATTTTACTTA

                *                   
       1261 ATGATTTTTGATGTTATTTTACTT
          1 ATGAGTTTTGATGTTATTTTACTT

       1285 GAAAAATTGA


Statistics
Matches: 23,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  25   23  1.00

ACGTcount: A:0.22, C:0.04, G:0.14, T:0.59


Consensus pattern (25 bp):   
ATGAGTTTTGATGTTATTTTACTTA

Found at i:1304 original size:32 final size:32

Alignment explanation


    Indices: 1263--1327  Score: 112
    Period size: 32  Copynumber: 2.0  Consensus size: 32

       1253 TTTACTTAAT

                      *     *               
       1263 GATTTTTGATGTTATTTTACTTGAAAAATTGA
          1 GATTTTTGATATTATTGTACTTGAAAAATTGA

                                            
       1295 GATTTTTGATATTATTGTACTTGAAAAATTGA
          1 GATTTTTGATATTATTGTACTTGAAAAATTGA

             
       1327 G
          1 G

       1328 GTTTGAAAGT


Statistics
Matches: 31,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  32   31  1.00

ACGTcount: A:0.32, C:0.03, G:0.17, T:0.48


Consensus pattern (32 bp):   
GATTTTTGATATTATTGTACTTGAAAAATTGA
Done.