Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006018.1 Corchorus olitorius cultivar O-4 contig06043, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 688

Length: 1148
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.29


Found at i:42 original size:24 final size:23

Alignment explanation


    Indices: 3--84  Score: 74
    Period size: 25  Copynumber: 3.3  Consensus size: 23

          1 AA

                                     
          3 AAAAAAAAAATTGTTTCTGCGTCAT
          1 AAAAAAAAAA--GTTTCTGCGTCAT

                           *       *  
         28 AAAAAAAAAGAGTTTTTGCGTTTTAT
          1 AAAAAAAAA-AGTTTCTGCG--TCAT

                      **           
         54 AAAAAAAAAAAATTCTGCGTCAT
          1 AAAAAAAAAAGTTTCTGCGTCAT

               *    
         77 AAATAAAA
          1 AAAAAAAA

         85 TTTTTTTTTC


Statistics
Matches: 47,  Mismatches: 7, Indels: 8
        0.76            0.11        0.13

Matches are distributed among these distances:
  23   10  0.21
  24    8  0.17
  25   16  0.34
  26   13  0.28

ACGTcount: A:0.51, C:0.09, G:0.11, T:0.29


Consensus pattern (23 bp):   
AAAAAAAAAAGTTTCTGCGTCAT

Done.