Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000602.1 Corchorus olitorius cultivar O-4 contig00602, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 704

Length: 1174
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.33


Found at i:433 original size:69 final size:69

Alignment explanation


    Indices: 353--531  Score: 286
    Period size: 69  Copynumber: 2.6  Consensus size: 69

        343 GAAGTAAGGC

                                  *             *          * *               
        353 TTGACTCGTATGGAAACGAGTTCGGCTTGTGGAAAAACCTATATGGCTTGGATGGAACCAAGGCT
          1 TTGACTCGTATGGAAACGAGTTTGGCTTGTGGAAAAGCCTATATGGCGTAGATGGAACCAAGGCT

                
        418 TAAA
         66 TAAA

                                                      *                      
        422 TTGACTCGTATGGAAACGAGTTTGGCTTGTGGAAAAGCCTATGTGGCGTAGATGGAACCAAGGCT
          1 TTGACTCGTATGGAAACGAGTTTGGCTTGTGGAAAAGCCTATATGGCGTAGATGGAACCAAGGCT

                
        487 TAAA
         66 TAAA

            *      *                *                
        491 CTGACTCATATGGAAACGAGTTTGTCTTGTGGAAAAGCCTA
          1 TTGACTCGTATGGAAACGAGTTTGGCTTGTGGAAAAGCCTA

        532 ATCATTCGGA


Statistics
Matches: 102,  Mismatches: 8, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  69  102  1.00

ACGTcount: A:0.30, C:0.16, G:0.28, T:0.27


Consensus pattern (69 bp):   
TTGACTCGTATGGAAACGAGTTTGGCTTGTGGAAAAGCCTATATGGCGTAGATGGAACCAAGGCT
TAAA
Done.