Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000603.1 Corchorus olitorius cultivar O-4 contig00603, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 921

Length: 1535
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28


Found at i:1428 original size:30 final size:31

Alignment explanation


    Indices: 1392--1451  Score: 88
    Period size: 30  Copynumber: 2.0  Consensus size: 31

       1382 AATTCTTGCC

                                            
       1392 TCTTCAAATAATTCTTC-AAT-AGTCTTCAAG
          1 TCTTCAAATAATT-TTCAAATAAGTCTTCAAG

                     *                    
       1422 TCTTCAAATTATTTTCAAATAAGTCTTCAA
          1 TCTTCAAATAATTTTCAAATAAGTCTTCAA

       1452 ACACGAACTT


Statistics
Matches: 27,  Mismatches: 1, Indels: 3
        0.87            0.03        0.10

Matches are distributed among these distances:
  29    3  0.11
  30   15  0.56
  31    9  0.33

ACGTcount: A:0.35, C:0.18, G:0.05, T:0.42


Consensus pattern (31 bp):   
TCTTCAAATAATTTTCAAATAAGTCTTCAAG

Done.