Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000604.1 Corchorus olitorius cultivar O-4 contig00604, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 960

Length: 1600
ACGTcount: A:0.31, C:0.18, G:0.17, T:0.34


Found at i:1035 original size:6 final size:6

Alignment explanation


    Indices: 1024--1091  Score: 100
    Period size: 6  Copynumber: 11.3  Consensus size: 6

       1014 ATCAAAAGAA

                                                               *   
       1024 TTTTCC TTTTCC TTTTCC TTTTCC TTTTCC TTTTCC TTTTCC TTCTCC
          1 TTTTCC TTTTCC TTTTCC TTTTCC TTTTCC TTTTCC TTTTCC TTTTCC

              *      *      *      
       1072 TTCTCC TTCTCC TTCTCC TT
          1 TTTTCC TTTTCC TTTTCC TT

       1092 ATCTTCTTGA


Statistics
Matches: 61,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
   6   61  1.00

ACGTcount: A:0.00, C:0.38, G:0.00, T:0.62


Consensus pattern (6 bp):   
TTTTCC

Found at i:1409 original size:54 final size:55

Alignment explanation


    Indices: 1306--1412  Score: 155
    Period size: 54  Copynumber: 1.9  Consensus size: 55

       1296 TGGCAGTTCA

                                                *                    
       1306 CTTGCTGCCTCTTGGCGACCAGCGGGATCAGCTGCTGGTTGTTGATGATGATCGTCC
          1 CTTGCTGCCTCTTGGCGACCA--GGGATCAGCTGCTAGTTGTTGATGATGATCGTCC

                                          *                     
       1363 CTTGCTGCCTCTT-GCTGACCA-GGATCAGTTGCTAGTTGTTGATGATGATC
          1 CTTGCTGCCTCTTGGC-GACCAGGGATCAGCTGCTAGTTGTTGATGATGATC

       1413 CAAGTTATCA


Statistics
Matches: 47,  Mismatches: 2, Indels: 5
        0.87            0.04        0.09

Matches are distributed among these distances:
  54   27  0.57
  56    2  0.04
  57   18  0.38

ACGTcount: A:0.14, C:0.24, G:0.29, T:0.33


Consensus pattern (55 bp):   
CTTGCTGCCTCTTGGCGACCAGGGATCAGCTGCTAGTTGTTGATGATGATCGTCC
Done.