Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006045.1 Corchorus olitorius cultivar O-4 contig06070, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 756

Length: 1261
ACGTcount: A:0.38, C:0.08, G:0.12, T:0.43


Found at i:1177 original size:14 final size:14

Alignment explanation


    Indices: 1158--1190  Score: 57
    Period size: 14  Copynumber: 2.4  Consensus size: 14

       1148 TTTCATAGAC

                          
       1158 TATTTCACTTGGAT
          1 TATTTCACTTGGAT

                   *      
       1172 TATTTCATTTGGAT
          1 TATTTCACTTGGAT

                 
       1186 TATTT
          1 TATTT

       1191 TAATATATAA


Statistics
Matches: 18,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  14   18  1.00

ACGTcount: A:0.21, C:0.09, G:0.12, T:0.58


Consensus pattern (14 bp):   
TATTTCACTTGGAT
Done.