Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006047.1 Corchorus olitorius cultivar O-4 contig06072, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3561
ACGTcount: A:0.34, C:0.15, G:0.17, T:0.33


Found at i:2883 original size:11 final size:11

Alignment explanation


    Indices: 2859--2893  Score: 52
    Period size: 11  Copynumber: 3.2  Consensus size: 11

       2849 TTGACAGCGC

                       
       2859 AACAAAAACAA
          1 AACAAAAACAA

               *     * 
       2870 AACGAAAACGA
          1 AACAAAAACAA

                       
       2881 AACAAAAACAA
          1 AACAAAAACAA

              
       2892 AA
          1 AA

       2894 AACAGAAAAA


Statistics
Matches: 20,  Mismatches: 4, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
  11   20  1.00

ACGTcount: A:0.77, C:0.17, G:0.06, T:0.00


Consensus pattern (11 bp):   
AACAAAAACAA
Done.