Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006058.1 Corchorus olitorius cultivar O-4 contig06083, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 755

Length: 1259
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.30


Found at i:307 original size:20 final size:18

Alignment explanation


    Indices: 274--310  Score: 56
    Period size: 20  Copynumber: 1.9  Consensus size: 18

        264 TTGAAATAAA

                              
        274 TCTTCAATAGTCTTCAAG
          1 TCTTCAATAGTCTTCAAG

                               
        292 TCTTCAATTAAGTCTTCAA
          1 TCTTCAA-T-AGTCTTCAA

        311 ATGGTCTTCA


Statistics
Matches: 17,  Mismatches: 0, Indels: 2
        0.89            0.00        0.11

Matches are distributed among these distances:
  18    7  0.41
  19    1  0.06
  20    9  0.53

ACGTcount: A:0.30, C:0.22, G:0.08, T:0.41


Consensus pattern (18 bp):   
TCTTCAATAGTCTTCAAG
Done.