Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006065.1 Corchorus olitorius cultivar O-4 contig06090, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 720

Length: 1201
ACGTcount: A:0.23, C:0.22, G:0.25, T:0.30


Found at i:497 original size:28 final size:28

Alignment explanation


    Indices: 461--528  Score: 118
    Period size: 28  Copynumber: 2.4  Consensus size: 28

        451 CCTGGCGTGT

                *                       
        461 GGCGTGCGGGCTGGCCTAGCGACGCTGG
          1 GGCGCGCGGGCTGGCCTAGCGACGCTGG

                             *          
        489 GGCGCGCGGGCTGGCCTGGCGACGCTGG
          1 GGCGCGCGGGCTGGCCTAGCGACGCTGG

                        
        517 GGCGCGCGGGCT
          1 GGCGCGCGGGCT

        529 TGCTTGCTGA


Statistics
Matches: 38,  Mismatches: 2, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  28   38  1.00

ACGTcount: A:0.04, C:0.31, G:0.53, T:0.12


Consensus pattern (28 bp):   
GGCGCGCGGGCTGGCCTAGCGACGCTGG

Done.