Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006068.1 Corchorus olitorius cultivar O-4 contig06093, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 705

Length: 1176
ACGTcount: A:0.36, C:0.19, G:0.14, T:0.31


Found at i:525 original size:11 final size:11

Alignment explanation


    Indices: 497--539  Score: 65
    Period size: 11  Copynumber: 4.2  Consensus size: 11

        487 AAACGGCATC

                       
        497 AATGGTCTTC-
          1 AATGGTCTTCA

                       
        507 AA--GTCTTCA
          1 AATGGTCTTCA

                       
        516 AATGGTCTTCA
          1 AATGGTCTTCA

                       
        527 AATGGTCTTCA
          1 AATGGTCTTCA

              
        538 AA
          1 AA

        540 CACGAACTTC


Statistics
Matches: 30,  Mismatches: 0, Indels: 5
        0.86            0.00        0.14

Matches are distributed among these distances:
   8    6  0.20
   9    2  0.07
  10    2  0.07
  11   20  0.67

ACGTcount: A:0.30, C:0.19, G:0.16, T:0.35


Consensus pattern (11 bp):   
AATGGTCTTCA
Done.