Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006069.1 Corchorus olitorius cultivar O-4 contig06094, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 606

Length: 1011
ACGTcount: A:0.36, C:0.18, G:0.11, T:0.35


Found at i:868 original size:50 final size:50

Alignment explanation


    Indices: 808--908  Score: 184
    Period size: 50  Copynumber: 2.0  Consensus size: 50

        798 TCGAAAAAAT

                                                              
        808 TATGCCATATTTGAAGATTATGATGCATGCAGACTCTCTATTAACTAAAC
          1 TATGCCATATTTGAAGATTATGATGCATGCAGACTCTCTATTAACTAAAC

                *       *                                     
        858 TATGGCATATTTTAAGATTATGATGCATGCAGACTCTCTATTAACTAAAC
          1 TATGCCATATTTGAAGATTATGATGCATGCAGACTCTCTATTAACTAAAC

             
        908 T
          1 T

        909 CTCTCCCCCA


Statistics
Matches: 49,  Mismatches: 2, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  50   49  1.00

ACGTcount: A:0.34, C:0.17, G:0.14, T:0.36


Consensus pattern (50 bp):   
TATGCCATATTTGAAGATTATGATGCATGCAGACTCTCTATTAACTAAAC
Done.