Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006070.1 Corchorus olitorius cultivar O-4 contig06095, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1914
ACGTcount: A:0.38, C:0.13, G:0.12, T:0.38


Found at i:206 original size:7 final size:7

Alignment explanation


    Indices: 194--233  Score: 55
    Period size: 7  Copynumber: 5.9  Consensus size: 7

        184 TTACGTATCT

                *  
        194 TTATGGA
          1 TTATAGA

                *  
        201 TTATGGA
          1 TTATAGA

                   
        208 TTATAGA
          1 TTATAGA

                   
        215 TTATAGA
          1 TTATAGA

                   
        222 TTATAGA
          1 TTATAGA

                  
        229 -TATAG
          1 TTATAG

        234 CATATGCATA


Statistics
Matches: 32,  Mismatches: 1, Indels: 1
        0.94            0.03        0.03

Matches are distributed among these distances:
   6    5  0.16
   7   27  0.84

ACGTcount: A:0.38, C:0.00, G:0.20, T:0.42


Consensus pattern (7 bp):   
TTATAGA

Done.