Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006087.1 Corchorus olitorius cultivar O-4 contig06112, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 966

Length: 1610
ACGTcount: A:0.30, C:0.24, G:0.20, T:0.26


Found at i:883 original size:21 final size:21

Alignment explanation


    Indices: 828--894  Score: 71
    Period size: 21  Copynumber: 3.1  Consensus size: 21

        818 CCAAGCCATT

                     *            
        828 ACCGGCCATTCACCGTGCCACC
          1 ACCGGCCATGC-CCGTGCCACC

                 ** *            
        850 ACCGGTTAAGCCCGTGCCACC
          1 ACCGGCCATGCCCGTGCCACC

                         *     * 
        871 ACCGGCCATGCCCATGCCATC
          1 ACCGGCCATGCCCGTGCCACC

               
        892 ACC
          1 ACC

        895 ATTCCAAGCC


Statistics
Matches: 36,  Mismatches: 9, Indels: 1
        0.78            0.20        0.02

Matches are distributed among these distances:
  21   29  0.81
  22    7  0.19

ACGTcount: A:0.19, C:0.48, G:0.19, T:0.13


Consensus pattern (21 bp):   
ACCGGCCATGCCCGTGCCACC

Found at i:1266 original size:15 final size:14

Alignment explanation


    Indices: 1246--1275  Score: 51
    Period size: 15  Copynumber: 2.1  Consensus size: 14

       1236 ATCTTTTTAA

                           
       1246 TTTTCCTTGCATTAT
          1 TTTTCCTTG-ATTAT

                          
       1261 TTTTCCTTGATTAT
          1 TTTTCCTTGATTAT

             
       1275 T
          1 T

       1276 GCTTTGATTG


Statistics
Matches: 15,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  14    6  0.40
  15    9  0.60

ACGTcount: A:0.13, C:0.17, G:0.07, T:0.63


Consensus pattern (14 bp):   
TTTTCCTTGATTAT
Done.