Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006092.1 Corchorus olitorius cultivar O-4 contig06117, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 754

Length: 1258
ACGTcount: A:0.37, C:0.14, G:0.13, T:0.36


Found at i:690 original size:67 final size:67

Alignment explanation


    Indices: 607--742  Score: 272
    Period size: 67  Copynumber: 2.0  Consensus size: 67

        597 TCTTTACTAG

                                                                             
        607 TATATATATATATACATATTTAGACATTAAGAATTACAGGAAATTAGAACCAGAACCTGCTTCTT
          1 TATATATATATATACATATTTAGACATTAAGAATTACAGGAAATTAGAACCAGAACCTGCTTCTT

              
        672 TA
         66 TA

                                                                             
        674 TATATATATATATACATATTTAGACATTAAGAATTACAGGAAATTAGAACCAGAACCTGCTTCTT
          1 TATATATATATATACATATTTAGACATTAAGAATTACAGGAAATTAGAACCAGAACCTGCTTCTT

              
        739 TA
         66 TA

              
        741 TA
          1 TA

        743 AAAGGTGGCA


Statistics
Matches: 69,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  67   69  1.00

ACGTcount: A:0.42, C:0.13, G:0.10, T:0.35


Consensus pattern (67 bp):   
TATATATATATATACATATTTAGACATTAAGAATTACAGGAAATTAGAACCAGAACCTGCTTCTT
TA
Done.