Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006096.1 Corchorus olitorius cultivar O-4 contig06121, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 841

Length: 1402
ACGTcount: A:0.33, C:0.23, G:0.22, T:0.22


Found at i:728 original size:15 final size:15

Alignment explanation


    Indices: 673--722  Score: 100
    Period size: 15  Copynumber: 3.3  Consensus size: 15

        663 TTTTCATTTA

                           
        673 TTTAGTATTCAGCAT
          1 TTTAGTATTCAGCAT

                           
        688 TTTAGTATTCAGCAT
          1 TTTAGTATTCAGCAT

                           
        703 TTTAGTATTCAGCAT
          1 TTTAGTATTCAGCAT

                 
        718 TTTAG
          1 TTTAG

        723 GTTTCAAAGG


Statistics
Matches: 35,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   35  1.00

ACGTcount: A:0.26, C:0.12, G:0.14, T:0.48


Consensus pattern (15 bp):   
TTTAGTATTCAGCAT
Done.