Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006105.1 Corchorus olitorius cultivar O-4 contig06130, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 708

Length: 1181
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.27


Found at i:654 original size:10 final size:10

Alignment explanation


    Indices: 639--663  Score: 50
    Period size: 10  Copynumber: 2.5  Consensus size: 10

        629 GAGAAAGAGA

                      
        639 GCCGGGGATC
          1 GCCGGGGATC

                      
        649 GCCGGGGATC
          1 GCCGGGGATC

                 
        659 GCCGG
          1 GCCGG

        664 CTTTGGAGAA


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  10   15  1.00

ACGTcount: A:0.08, C:0.32, G:0.52, T:0.08


Consensus pattern (10 bp):   
GCCGGGGATC
Done.