Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006107.1 Corchorus olitorius cultivar O-4 contig06132, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 876

Length: 1461
ACGTcount: A:0.39, C:0.12, G:0.14, T:0.35


Found at i:919 original size:3 final size:3

Alignment explanation


    Indices: 911--960  Score: 100
    Period size: 3  Copynumber: 16.7  Consensus size: 3

        901 TAATTATCAA

                                                                           
        911 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
          1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT

              
        959 AA
          1 AA

        961 AACATACAAA


Statistics
Matches: 47,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   47  1.00

ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32


Consensus pattern (3 bp):   
AAT

Found at i:1343 original size:15 final size:17

Alignment explanation


    Indices: 1313--1352  Score: 57
    Period size: 15  Copynumber: 2.5  Consensus size: 17

       1303 AACGAATTAA

                             
       1313 TTAAATAAATATAAATT
          1 TTAAATAAATATAAATT

                             
       1330 TTAAATAAA-A-AAATT
          1 TTAAATAAATATAAATT

             *      
       1345 TCAAATAA
          1 TTAAATAA

       1353 TTTTGGGAAG


Statistics
Matches: 22,  Mismatches: 1, Indels: 2
        0.88            0.04        0.08

Matches are distributed among these distances:
  15   12  0.55
  16    1  0.05
  17    9  0.41

ACGTcount: A:0.62, C:0.03, G:0.00, T:0.35


Consensus pattern (17 bp):   
TTAAATAAATATAAATT
Done.