Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006113.1 Corchorus olitorius cultivar O-4 contig06138, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1768
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.35


Found at i:1552 original size:8 final size:9

Alignment explanation


    Indices: 1526--1550  Score: 50
    Period size: 9  Copynumber: 2.8  Consensus size: 9

       1516 ATGGTACAAT

                     
       1526 TTCTTTTTC
          1 TTCTTTTTC

                     
       1535 TTCTTTTTC
          1 TTCTTTTTC

                   
       1544 TTCTTTT
          1 TTCTTTT

       1551 CTATCCTTAA


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   16  1.00

ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80


Consensus pattern (9 bp):   
TTCTTTTTC
Done.