Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000612.1 Corchorus olitorius cultivar O-4 contig00612, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 681

Length: 1136
ACGTcount: A:0.32, C:0.26, G:0.20, T:0.22


Found at i:790 original size:21 final size:21

Alignment explanation


    Indices: 766--819  Score: 72
    Period size: 21  Copynumber: 2.6  Consensus size: 21

        756 ACCTACCACT

                         **      
        766 GTGCCATCACCAGTTAAGCCC
          1 GTGCCATCACCAGCCAAGCCC

                  *         *    
        787 GTGCCACCACCAGCCATGCCC
          1 GTGCCATCACCAGCCAAGCCC

                        
        808 GTGCCATCACCA
          1 GTGCCATCACCA

        820 TTTAGTGCTT


Statistics
Matches: 28,  Mismatches: 5, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  21   28  1.00

ACGTcount: A:0.22, C:0.44, G:0.19, T:0.15


Consensus pattern (21 bp):   
GTGCCATCACCAGCCAAGCCC
Done.