Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006122.1 Corchorus olitorius cultivar O-4 contig06147, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 761

Length: 1269
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.34


Found at i:321 original size:35 final size:35

Alignment explanation


    Indices: 276--382  Score: 155
    Period size: 35  Copynumber: 3.1  Consensus size: 35

        266 ACTTTCGTAG

                                               
        276 GCTTTGTTGTTGCTTTGTTGATGGAGAAGAACTTT
          1 GCTTTGTTGTTGCTTTGTTGATGGAGAAGAACTTT

                                               
        311 GCTTTGTTGTTGCTTTGTTGATGGAGAA-AACTTT
          1 GCTTTGTTGTTGCTTTGTTGATGGAGAAGAACTTT

                ** *                             
        345 GCTGCAGAT-TTGCTTTGCTTGATGGAGAAGAACTTT
          1 GCT-TTGTTGTTGCTTTG-TTGATGGAGAAGAACTTT

              
        381 GC
          1 GC

        383 CTTACCTTGA


Statistics
Matches: 66,  Mismatches: 3, Indels: 5
        0.89            0.04        0.07

Matches are distributed among these distances:
  34   17  0.26
  35   41  0.62
  36    8  0.12

ACGTcount: A:0.19, C:0.11, G:0.28, T:0.42


Consensus pattern (35 bp):   
GCTTTGTTGTTGCTTTGTTGATGGAGAAGAACTTT

Done.