Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006127.1 Corchorus olitorius cultivar O-4 contig06152, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1709
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32


Found at i:985 original size:28 final size:28

Alignment explanation


    Indices: 953--1011  Score: 91
    Period size: 28  Copynumber: 2.1  Consensus size: 28

        943 TGTCCAAAGT

                     *                  
        953 TGCTATCATGTTAATAACTTGGCCAAGA
          1 TGCTATCATATTAATAACTTGGCCAAGA

                             *    *     
        981 TGCTATCATATTAATAAGTTGGGCAAGA
          1 TGCTATCATATTAATAACTTGGCCAAGA

               
       1009 TGC
          1 TGC

       1012 ATTACATTGG


Statistics
Matches: 28,  Mismatches: 3, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  28   28  1.00

ACGTcount: A:0.32, C:0.15, G:0.20, T:0.32


Consensus pattern (28 bp):   
TGCTATCATATTAATAACTTGGCCAAGA
Done.