Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006129.1 Corchorus olitorius cultivar O-4 contig06154, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2141
ACGTcount: A:0.39, C:0.15, G:0.16, T:0.31


Found at i:183 original size:14 final size:14

Alignment explanation


    Indices: 164--197  Score: 50
    Period size: 14  Copynumber: 2.4  Consensus size: 14

        154 CAGAAATCTG

                     *    
        164 AATTCAGAATCCAT
          1 AATTCAGAACCCAT

             *            
        178 ATTTCAGAACCCAT
          1 AATTCAGAACCCAT

                  
        192 AATTCA
          1 AATTCA

        198 AAACAGTCCA


Statistics
Matches: 17,  Mismatches: 3, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  14   17  1.00

ACGTcount: A:0.41, C:0.24, G:0.06, T:0.29


Consensus pattern (14 bp):   
AATTCAGAACCCAT

Found at i:586 original size:2 final size:2

Alignment explanation


    Indices: 579--612  Score: 52
    Period size: 2  Copynumber: 17.5  Consensus size: 2

        569 ATGCCAGAAA

                         *                                      
        579 AT AT AT AT AC AT AT AT AT AT AT AT AT AT -T AT AT A
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A

        613 CTGATCACAG


Statistics
Matches: 29,  Mismatches: 2, Indels: 2
        0.88            0.06        0.06

Matches are distributed among these distances:
   1    1  0.03
   2   28  0.97

ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47


Consensus pattern (2 bp):   
AT

Done.