Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006130.1 Corchorus olitorius cultivar O-4 contig06155, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 617

Length: 1029
ACGTcount: A:0.35, C:0.11, G:0.11, T:0.42


Found at i:921 original size:31 final size:31

Alignment explanation


    Indices: 861--932  Score: 83
    Period size: 31  Copynumber: 2.3  Consensus size: 31

        851 GGACGGGTTC

                *          *    *          
        861 TCAGATCATTCGGGTTTCGGTTCATCTGGAT
          1 TCAGGTCATTCGGGTCTCGGGTCATCTGGAT

                                            
        892 TCAGGTCATTCGGGTCTCGGGTC-TGCTGGAT
          1 TCAGGTCATTCGGGTCTCGGGTCAT-CTGGAT

             *        
        923 TTAGGGTCAT
          1 TCA-GGTCAT

        933 GCATGTTCGG


Statistics
Matches: 35,  Mismatches: 4, Indels: 3
        0.83            0.10        0.07

Matches are distributed among these distances:
  30    1  0.03
  31   28  0.80
  32    6  0.17

ACGTcount: A:0.14, C:0.19, G:0.31, T:0.36


Consensus pattern (31 bp):   
TCAGGTCATTCGGGTCTCGGGTCATCTGGAT
Done.