Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006131.1 Corchorus olitorius cultivar O-4 contig06156, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 688

Length: 1147
ACGTcount: A:0.33, C:0.10, G:0.16, T:0.40


Found at i:585 original size:25 final size:24

Alignment explanation


    Indices: 534--590  Score: 80
    Period size: 25  Copynumber: 2.4  Consensus size: 24

        524 GTCAGCCTTG

                                *   
        534 AATTT-TTTAATGTTTTATTCTTA
          1 AATTTATTTAATGTTTTATTATTA

                                    *
        557 AATTTATTTAATGTCTTTATTATTC
          1 AATTTATTTAATGT-TTTATTATTA

                     
        582 AATTTATTT
          1 AATTTATTT

        591 TACAATCCAC


Statistics
Matches: 30,  Mismatches: 2, Indels: 2
        0.88            0.06        0.06

Matches are distributed among these distances:
  23    5  0.17
  24    8  0.27
  25   17  0.57

ACGTcount: A:0.28, C:0.05, G:0.04, T:0.63


Consensus pattern (24 bp):   
AATTTATTTAATGTTTTATTATTA

Found at i:871 original size:17 final size:17

Alignment explanation


    Indices: 845--878  Score: 59
    Period size: 17  Copynumber: 2.0  Consensus size: 17

        835 TAATCTTATT

                 *           
        845 TAATATTTATTCATATA
          1 TAATAATTATTCATATA

                             
        862 TAATAATTATTCATATA
          1 TAATAATTATTCATATA

        879 ATGAAGTTTA


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  17   16  1.00

ACGTcount: A:0.44, C:0.06, G:0.00, T:0.50


Consensus pattern (17 bp):   
TAATAATTATTCATATA
Done.