Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006136.1 Corchorus olitorius cultivar O-4 contig06161, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1808
ACGTcount: A:0.29, C:0.20, G:0.21, T:0.30


Found at i:76 original size:16 final size:17

Alignment explanation


    Indices: 43--76  Score: 52
    Period size: 17  Copynumber: 2.1  Consensus size: 17

         33 TCCTCTTGCA

                    *        
         43 TGAAAGCACTTCTTTTT
          1 TGAAAGCAATTCTTTTT

                             
         60 TGAAAGCAATT-TTTTT
          1 TGAAAGCAATTCTTTTT

             
         76 T
          1 T

         77 AACTACCCTT


Statistics
Matches: 16,  Mismatches: 1, Indels: 1
        0.89            0.06        0.06

Matches are distributed among these distances:
  16    6  0.38
  17   10  0.62

ACGTcount: A:0.26, C:0.12, G:0.12, T:0.50


Consensus pattern (17 bp):   
TGAAAGCAATTCTTTTT
Done.