Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006138.1 Corchorus olitorius cultivar O-4 contig06163, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1820
ACGTcount: A:0.39, C:0.11, G:0.11, T:0.39


Found at i:341 original size:27 final size:27

Alignment explanation


    Indices: 266--346  Score: 117
    Period size: 30  Copynumber: 2.9  Consensus size: 27

        256 ATACCACTAA

                         *             
        266 TAATAATTATTATTATAATAATAAGTT
          1 TAATAATTATTATAATAATAATAAGTT

                      *                   
        293 TAATAATTATAATACCACTAATAATAAGTT
          1 TAATAATTATTATA--A-TAATAATAAGTT

                                    
        323 TAATAATTATTATAATAATAATAA
          1 TAATAATTATTATAATAATAATAA

        347 TAAGTCTAAA


Statistics
Matches: 48,  Mismatches: 3, Indels: 6
        0.84            0.05        0.11

Matches are distributed among these distances:
  27   21  0.44
  28    1  0.02
  29    1  0.02
  30   25  0.52

ACGTcount: A:0.52, C:0.04, G:0.02, T:0.42


Consensus pattern (27 bp):   
TAATAATTATTATAATAATAATAAGTT
Done.