Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006140.1 Corchorus olitorius cultivar O-4 contig06165, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 801

Length: 1335
ACGTcount: A:0.34, C:0.24, G:0.19, T:0.23


Found at i:817 original size:21 final size:21

Alignment explanation


    Indices: 791--832  Score: 84
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        781 CAACGGAGAA

                                 
        791 CCCGTTGAGGACAGCCCACTC
          1 CCCGTTGAGGACAGCCCACTC

                                 
        812 CCCGTTGAGGACAGCCCACTC
          1 CCCGTTGAGGACAGCCCACTC

        833 ACAGTTCAGG


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   21  1.00

ACGTcount: A:0.19, C:0.43, G:0.24, T:0.14


Consensus pattern (21 bp):   
CCCGTTGAGGACAGCCCACTC
Done.