Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006143.1 Corchorus olitorius cultivar O-4 contig06168, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 721

Length: 1202
ACGTcount: A:0.36, C:0.15, G:0.15, T:0.34


Found at i:107 original size:60 final size:60

Alignment explanation


    Indices: 1--121  Score: 181
    Period size: 60  Copynumber: 2.0  Consensus size: 60

                               * *                                      
          1 GGCCAAATTAAAAGATCGGGCTCTTATTTGAACATTTTCAATAACGTTAGGCCCTTATTT
          1 GGCCAAATTAAAAGATCGGACCCTTATTTGAACATTTTCAATAACGTTAGGCCCTTATTT

                *                          *      *                      
         61 GGCCCAATTAAAAGATCGGACCCTTATTTGAGCATTTTGACA-AACGTTAGGCCCTTATTT
          1 GGCCAAATTAAAAGATCGGACCCTTATTTGAACATTTTCA-ATAACGTTAGGCCCTTATTT

             
        121 G
          1 G

        122 AGCAATTAGC


Statistics
Matches: 55,  Mismatches: 5, Indels: 2
        0.89            0.08        0.03

Matches are distributed among these distances:
  60   54  0.98
  61    1  0.02

ACGTcount: A:0.29, C:0.20, G:0.18, T:0.33


Consensus pattern (60 bp):   
GGCCAAATTAAAAGATCGGACCCTTATTTGAACATTTTCAATAACGTTAGGCCCTTATTT
Done.