Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006145.1 Corchorus olitorius cultivar O-4 contig06170, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2965
ACGTcount: A:0.30, C:0.19, G:0.20, T:0.30


Found at i:1633 original size:21 final size:21

Alignment explanation


    Indices: 1590--1638  Score: 62
    Period size: 21  Copynumber: 2.3  Consensus size: 21

       1580 GGCTTGGAAT

                *            **  
       1590 GGTGATGGCACGGGCATGGCC
          1 GGTGGTGGCACGGGCATAACC

                           *     
       1611 GGTGGTGGCACGGGCTTAACC
          1 GGTGGTGGCACGGGCATAACC

                   
       1632 GGTGGTG
          1 GGTGGTG

       1639 TGGCAATCGG


Statistics
Matches: 24,  Mismatches: 4, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  21   24  1.00

ACGTcount: A:0.12, C:0.20, G:0.49, T:0.18


Consensus pattern (21 bp):   
GGTGGTGGCACGGGCATAACC
Done.