Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006152.1 Corchorus olitorius cultivar O-4 contig06177, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 647

Length: 1079
ACGTcount: A:0.39, C:0.14, G:0.11, T:0.37

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:629 original size:9 final size:9

Alignment explanation


    Indices: 615--655  Score: 61
    Period size: 9  Copynumber: 4.9  Consensus size: 9

        605 ATAAGAACAA

                     
        615 ATCATATAT
          1 ATCATATAT

                     
        624 ATC--ATAT
          1 ATCATATAT

                     
        631 ATCATATAT
          1 ATCATATAT

                     
        640 ATCATATAT
          1 ATCATATAT

                    
        649 AT-ATATA
          1 ATCATATA

        656 ATGATAACAA


Statistics
Matches: 30,  Mismatches: 0, Indels: 5
        0.86            0.00        0.14

Matches are distributed among these distances:
   7    7  0.23
   8    5  0.17
   9   18  0.60

ACGTcount: A:0.46, C:0.10, G:0.00, T:0.44


Consensus pattern (9 bp):   
ATCATATAT

Found at i:636 original size:16 final size:16

Alignment explanation


    Indices: 615--655  Score: 75
    Period size: 16  Copynumber: 2.6  Consensus size: 16

        605 ATAAGAACAA

                            
        615 ATCATATATATCATAT
          1 ATCATATATATCATAT

                            
        631 ATCATATATATCATAT
          1 ATCATATATATCATAT

                      
        647 AT-ATATATA
          1 ATCATATATA

        656 ATGATAACAA


Statistics
Matches: 25,  Mismatches: 0, Indels: 1
        0.96            0.00        0.04

Matches are distributed among these distances:
  15    7  0.28
  16   18  0.72

ACGTcount: A:0.46, C:0.10, G:0.00, T:0.44


Consensus pattern (16 bp):   
ATCATATATATCATAT
Done.