Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006153.1 Corchorus olitorius cultivar O-4 contig06178, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 771

Length: 1286
ACGTcount: A:0.34, C:0.15, G:0.11, T:0.40


Found at i:640 original size:2 final size:2

Alignment explanation


    Indices: 635--659  Score: 50
    Period size: 2  Copynumber: 12.5  Consensus size: 2

        625 ATTTATATGT

                                                 
        635 TA TA TA TA TA TA TA TA TA TA TA TA T
          1 TA TA TA TA TA TA TA TA TA TA TA TA T

        660 TGAACTAATA


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   23  1.00

ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52


Consensus pattern (2 bp):   
TA

Found at i:650 original size:19 final size:19

Alignment explanation


    Indices: 615--653  Score: 51
    Period size: 19  Copynumber: 1.9  Consensus size: 19

        605 TTGGCATTGA

                        *      
        615 TTATATAATAATTTATATG
          1 TTATATAATAATATATATG

                                
        634 TTATATATATATATATATAT
          1 TTATATA-ATA-ATATATAT

        654 ATATATTGAA


Statistics
Matches: 17,  Mismatches: 1, Indels: 2
        0.85            0.05        0.10

Matches are distributed among these distances:
  19    7  0.41
  20    3  0.18
  21    7  0.41

ACGTcount: A:0.44, C:0.00, G:0.03, T:0.54


Consensus pattern (19 bp):   
TTATATAATAATATATATG
Done.