Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006160.1 Corchorus olitorius cultivar O-4 contig06185, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 719

Length: 1199
ACGTcount: A:0.33, C:0.11, G:0.13, T:0.43


Found at i:1025 original size:25 final size:24

Alignment explanation


    Indices: 974--1030  Score: 71
    Period size: 25  Copynumber: 2.4  Consensus size: 24

        964 GTCAGTCTTG

                                *   
        974 AATTT-TTTAATATTTAATTCTTA
          1 AATTTATTTAATATTTAATTATTA

                        *           *
        997 AATTTATTTAATGTCTTAATTATTC
          1 AATTTATTTAATAT-TTAATTATTA

                     
       1022 AATTTATTT
          1 AATTTATTT

       1031 TACAATCCAC


Statistics
Matches: 29,  Mismatches: 3, Indels: 2
        0.85            0.09        0.06

Matches are distributed among these distances:
  23    5  0.17
  24    7  0.24
  25   17  0.59

ACGTcount: A:0.33, C:0.05, G:0.02, T:0.60


Consensus pattern (24 bp):   
AATTTATTTAATATTTAATTATTA
Done.