Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006163.1 Corchorus olitorius cultivar O-4 contig06188, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 786

Length: 1311
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34


Found at i:643 original size:11 final size:12

Alignment explanation


    Indices: 604--643  Score: 55
    Period size: 12  Copynumber: 3.4  Consensus size: 12

        594 CCAGGCGCGC

                        
        604 GGGCCAGCGCTT
          1 GGGCCAGCGCTT

              *       * 
        616 GGCCCAGCGCCT
          1 GGGCCAGCGCTT

                        
        628 GGGCCAG-GCTT
          1 GGGCCAGCGCTT

                 
        639 GGGCC
          1 GGGCC

        644 CTAAGCCCAA


Statistics
Matches: 24,  Mismatches: 4, Indels: 1
        0.83            0.14        0.03

Matches are distributed among these distances:
  11    8  0.33
  12   16  0.67

ACGTcount: A:0.07, C:0.38, G:0.42, T:0.12


Consensus pattern (12 bp):   
GGGCCAGCGCTT
Done.