Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006166.1 Corchorus olitorius cultivar O-4 contig06191, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 885

Length: 1475
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.33


Found at i:866 original size:42 final size:42

Alignment explanation


    Indices: 820--901  Score: 119
    Period size: 42  Copynumber: 2.0  Consensus size: 42

        810 TGTATATATA

                             *                        
        820 TATATATGTTCATACATTCATCATGCATTATCCATCCATTTG
          1 TATATATGTTCATACATACATCATGCATTATCCATCCATTTG

                         *    **               *    
        862 TATATATGTTCATGCATAGGTCATGCATTATCCATTCATT
          1 TATATATGTTCATACATACATCATGCATTATCCATCCATT

        902 ATCACATGCA


Statistics
Matches: 35,  Mismatches: 5, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  42   35  1.00

ACGTcount: A:0.28, C:0.20, G:0.10, T:0.43


Consensus pattern (42 bp):   
TATATATGTTCATACATACATCATGCATTATCCATCCATTTG
Done.