Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006168.1 Corchorus olitorius cultivar O-4 contig06193, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 693

Length: 1155
ACGTcount: A:0.37, C:0.22, G:0.12, T:0.28


Found at i:1088 original size:33 final size:33

Alignment explanation


    Indices: 1051--1155  Score: 106
    Period size: 33  Copynumber: 3.2  Consensus size: 33

       1041 ATTAGCTTCC

                           *                  
       1051 AAAACAGAATTT-GTTTCATCACAAACAACACCT
          1 AAAACAG-ATTTAGTGTCATCACAAACAACACCT

                                             
       1084 AAAACAGATTTAGTGTCATCACAAACAACA-CT
          1 AAAACAGATTTAGTGTCATCACAAACAACACCT

                **  *    * *       *       *  
       1116 CAAATTAGTTTTAATATCATCACTAACAACATCT
          1 -AAAACAGATTTAGTGTCATCACAAACAACACCT

                  
       1150 AAAACA
          1 AAAACA


Statistics
Matches: 60,  Mismatches: 9, Indels: 6
        0.80            0.12        0.08

Matches are distributed among these distances:
  32    6  0.10
  33   52  0.87
  34    2  0.03

ACGTcount: A:0.47, C:0.22, G:0.06, T:0.26


Consensus pattern (33 bp):   
AAAACAGATTTAGTGTCATCACAAACAACACCT
Done.