Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006171.1 Corchorus olitorius cultivar O-4 contig06196, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 672

Length: 1120
ACGTcount: A:0.25, C:0.20, G:0.23, T:0.32


Found at i:1101 original size:20 final size:21

Alignment explanation


    Indices: 1067--1108  Score: 77
    Period size: 20  Copynumber: 2.0  Consensus size: 21

       1057 TCTTATGGTC

                                 
       1067 TTGTGTACTTTGGTGAATATT
          1 TTGTGTACTTTGGTGAATATT

                                 
       1088 TTGTGTAC-TTGGTGAATATT
          1 TTGTGTACTTTGGTGAATATT

             
       1108 T
          1 T

       1109 GTACCTGTAT


Statistics
Matches: 21,  Mismatches: 0, Indels: 1
        0.95            0.00        0.05

Matches are distributed among these distances:
  20   13  0.62
  21    8  0.38

ACGTcount: A:0.19, C:0.05, G:0.24, T:0.52


Consensus pattern (21 bp):   
TTGTGTACTTTGGTGAATATT
Done.