Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006182.1 Corchorus olitorius cultivar O-4 contig06207, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 633

Length: 1056
ACGTcount: A:0.36, C:0.17, G:0.22, T:0.25


Found at i:662 original size:49 final size:47

Alignment explanation


    Indices: 567--708  Score: 176
    Period size: 49  Copynumber: 3.0  Consensus size: 47

        557 GAGCGTGCCA

                     *   *         *                 *      
        567 ATCAATTTTATCCAAAAAATTGATAAAAAGTGCAGTGAAAATTAAAAG
          1 ATCAATTTTGTCCTAAAAATTGAGAAAAAGTGCAGT-AAAAATAAAAG

                        *                                    
        615 ATCAATTTTGTCTTAAAAATTGAGAAAAAGGTGCAAGTAAAAATAAAAG
          1 ATCAATTTTGTCCTAAAAATTGAGAAAAA-GTGC-AGTAAAAATAAAAG

            *          **                           *    
        664 TTCAATTTTGTAGTAAAAATTGAGAAAAAGTGCAGTAAAAGTAAA
          1 ATCAATTTTGTCCTAAAAATTGAGAAAAAGTGCAGTAAAAATAAA

        709 GGATTGCTTG


Statistics
Matches: 83,  Mismatches: 9, Indels: 5
        0.86            0.09        0.05

Matches are distributed among these distances:
  47   11  0.13
  48   29  0.35
  49   40  0.48
  50    3  0.04

ACGTcount: A:0.51, C:0.06, G:0.15, T:0.27


Consensus pattern (47 bp):   
ATCAATTTTGTCCTAAAAATTGAGAAAAAGTGCAGTAAAAATAAAAG
Done.