Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006183.1 Corchorus olitorius cultivar O-4 contig06208, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 721

Length: 1202
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23


Found at i:974 original size:24 final size:21

Alignment explanation


    Indices: 919--973  Score: 83
    Period size: 21  Copynumber: 2.6  Consensus size: 21

        909 CAGCCATTCA

                 *               
        919 CCGTGACACCACCGGTTAAGC
          1 CCGTGCCACCACCGGTTAAGC

                              *  
        940 CCGTGCCACCACCGGTTATGC
          1 CCGTGCCACCACCGGTTAAGC

                    *    
        961 CCGTGCCATCACC
          1 CCGTGCCACCACC

        974 ATTCCAAGCC


Statistics
Matches: 31,  Mismatches: 3, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  21   31  1.00

ACGTcount: A:0.18, C:0.44, G:0.22, T:0.16


Consensus pattern (21 bp):   
CCGTGCCACCACCGGTTAAGC
Done.