Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01006186.1 Corchorus olitorius cultivar O-4 contig06211, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 861

Length: 1436
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.32


Found at i:887 original size:31 final size:29

Alignment explanation


    Indices: 784--865  Score: 103
    Period size: 29  Copynumber: 2.8  Consensus size: 29

        774 TGGAGTATAA

                            *     *         
        784 TCAATTCAGGATATAAGGTTTCCCACAAAACG
          1 TCAATTCAGGATATAACG-TT-ACA-AAAACG

                                         
        816 -CAATTCAGGATATAACGTTACAAAAACG
          1 TCAATTCAGGATATAACGTTACAAAAACG

                  *               
        844 TCAATTAAGGATATAACGTTAC
          1 TCAATTCAGGATATAACGTTAC

        866 CTAATCCGAT


Statistics
Matches: 46,  Mismatches: 3, Indels: 5
        0.85            0.06        0.09

Matches are distributed among these distances:
  28    6  0.13
  29   22  0.48
  30    2  0.04
  31   16  0.35

ACGTcount: A:0.41, C:0.18, G:0.15, T:0.26


Consensus pattern (29 bp):   
TCAATTCAGGATATAACGTTACAAAAACG
Done.